HL_6IP6_100

3D structure

PDB id

6IP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP6_100 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.25

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6IP6|1|2m|A|957
6IP6|1|2m|G|958
6IP6|1|2m|G|959
6IP6|1|2m|U|960
6IP6|1|2m|G|961
6IP6|1|2m|A|962
6IP6|1|2m|A|963
6IP6|1|2m|A|964
6IP6|1|2m|U|965
6IP6|1|2m|U|966

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2r

40S ribosomal protein S5

Chain 3L

40S ribosomal protein S14

Chain zv

mRNA