HL_6IP6_102
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6IP6|1|2m|U|1061
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_102 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2522
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6IP6|1|2m|G|1054
6IP6|1|2m|A|1055
6IP6|1|2m|U|1056
6IP6|1|2m|C|1057
6IP6|1|2m|A|1058
6IP6|1|2m|G|1059
6IP6|1|2m|A|1060
6IP6|1|2m|U|1061
6IP6|1|2m|A|1062
6IP6|1|2m|C|1063
6IP6|1|2m|C|1064
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3C
- 40S ribosomal protein S26
- Chain 3L
- 40S ribosomal protein S14
- Chain zv
- mRNA
- Chain zy
- Transfer RNA; tRNA
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