HL_6IP6_113
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 6IP6|1|2m|A|1623
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP6_113 not in the Motif Atlas
- Homologous match to HL_4V88_219
- Geometric discrepancy: 0.2521
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6IP6|1|2m|A|1614
6IP6|1|2m|U|1615
6IP6|1|2m|U|1616
6IP6|1|2m|G|1617
6IP6|1|2m|C|1618
6IP6|1|2m|A|1619
6IP6|1|2m|A|1620
6IP6|1|2m|U|1621
6IP6|1|2m|U|1622
6IP6|1|2m|A|1623
6IP6|1|2m|U|1624
6IP6|1|2m|U|1625
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 20
- 40S ribosomal protein S19
- Chain 2w
- 40S ribosomal protein S15
- Chain 2z
- 40S ribosomal protein S18
- Chain 3E
- 40S ribosomal protein S29
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