HL_6IP8_004

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6IP8|1|1A|C|133, 6IP8|1|1A|G|134, 6IP8|1|1A|G|135, 6IP8|1|1A|C|136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.4907

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6IP8|1|1A|C|131
6IP8|1|1A|G|132
6IP8|1|1A|C|133
6IP8|1|1A|G|134
6IP8|1|1A|G|135
6IP8|1|1A|C|136
6IP8|1|1A|G|137

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2H

60S ribosomal protein L15

Chain 2b

60S ribosomal protein L35

Chain 2d

60S ribosomal protein L37