HL_6IP8_016

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

6IP8|1|1A|A|1254, 6IP8|1|1A|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_016 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3463

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6IP8|1|1A|C|1252
6IP8|1|1A|G|1253
6IP8|1|1A|A|1254
6IP8|1|1A|A|1255
6IP8|1|1A|G|1256
6IP8|1|1A|A|1257
6IP8|1|1A|G|1258

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains