HL_6IP8_020

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6IP8|1|1A|G|1408, 6IP8|1|1A|U|1410, 6IP8|1|1A|C|1411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_020 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2628

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6IP8|1|1A|C|1405
6IP8|1|1A|G|1406
6IP8|1|1A|C|1407
6IP8|1|1A|G|1408
6IP8|1|1A|C|1409
6IP8|1|1A|U|1410
6IP8|1|1A|C|1411
6IP8|1|1A|G|1412

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2V

60S ribosomal protein L29