HL_6IP8_023
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_023 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.0955
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6IP8|1|1A|G|1561
6IP8|1|1A|G|1562
6IP8|1|1A|A|1563
6IP8|1|1A|A|1564
6IP8|1|1A|A|1565
6IP8|1|1A|C|1566
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2v
- 40S ribosomal protein S11
- Chain 3K
- 40S ribosomal protein S13
Coloring options: