HL_6IP8_030

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

6IP8|1|1A|A|1891, 6IP8|1|1A|A|1892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_030 not in the Motif Atlas

Homologous match to HL_8C3A_026

Geometric discrepancy: 0.1492

The information below is about HL_8C3A_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|G|1886
6IP8|1|1A|G|1887
6IP8|1|1A|A|1888
6IP8|1|1A|U|1889
6IP8|1|1A|G|1890
6IP8|1|1A|A|1891
6IP8|1|1A|A|1892
6IP8|1|1A|C|1893

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1B

5S ribosomal RNA; 5S rRNA

Chain 2Y

60S ribosomal protein L32

Chain 2Z

60S ribosomal protein L35a