HL_6IP8_066

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_066 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1875

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6IP8|1|1A|C|4417
6IP8|1|1A|G|4418
6IP8|1|1A|U|4419
6IP8|1|1A|U|4420
6IP8|1|1A|C|4421
6IP8|1|1A|A|4422
6IP8|1|1A|U|4423
6IP8|1|1A|A|4424
6IP8|1|1A|G|4425

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2g

Ubiquitin-60S ribosomal protein L40

Chain zw

Eukaryotic peptide chain release factor subunit 1