HL_6IP8_080
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6IP8|1|1C|A|82
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_080 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5437
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6IP8|1|1C|G|68
6IP8|1|1C|U|69
6IP8|1|1C|G|70
6IP8|1|1C|A|71
6IP8|1|1C|A|72
6IP8|1|1C|U|73
6IP8|1|1C|U|74
6IP8|1|1C|G|75
6IP8|1|1C|C|76
6IP8|1|1C|A|77
6IP8|1|1C|G|78
6IP8|1|1C|G|79
6IP8|1|1C|A|80
6IP8|1|1C|C|81
6IP8|1|1C|A|82
6IP8|1|1C|C|83
6IP8|1|1C|A|84
6IP8|1|1C|U|85
6IP8|1|1C|U|86
6IP8|1|1C|G|87
6IP8|1|1C|A|88
6IP8|1|1C|U|89
6IP8|1|1C|C|90
Current chains
- Chain 1C
- 5.8S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2S
- 60S ribosomal protein L26
- Chain 2b
- 60S ribosomal protein L35
- Chain 2d
- 60S ribosomal protein L37
- Chain 2f
- 60S ribosomal protein L39
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