HL_6IP8_085

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6IP8|1|2m|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_085 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2073

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP8|1|2m|G|156
6IP8|1|2m|U|157
6IP8|1|2m|A|158
6IP8|1|2m|A|159
6IP8|1|2m|U|160
6IP8|1|2m|U|161
6IP8|1|2m|C|162

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3H

40S ribosomal protein S6

Chain 3N

40S ribosomal protein S24