HL_6IP8_096

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_096 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1655

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6IP8|1|2m|C|618
6IP8|1|2m|A|619
6IP8|1|2m|G|620
6IP8|1|2m|C|621
6IP8|1|2m|C|622
6IP8|1|2m|G|623

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3B

40S ribosomal protein S23

Chain zv

mRNA