HL_6IP8_099

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCG

Length

18 nucleotides

Bulged bases

6IP8|1|2m|G|891, 6IP8|1|2m|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_099 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2982

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6IP8|1|2m|C|884
6IP8|1|2m|U|885
6IP8|1|2m|A|886
6IP8|1|2m|U|887
6IP8|1|2m|U|888
6IP8|1|2m|U|889
6IP8|1|2m|U|890
6IP8|1|2m|G|891
6IP8|1|2m|U|892
6IP8|1|2m|U|893
6IP8|1|2m|G|894
6IP8|1|2m|G|895
6IP8|1|2m|U|896
6IP8|1|2m|U|897
6IP8|1|2m|U|898
6IP8|1|2m|U|899
6IP8|1|2m|C|900
6IP8|1|2m|G|901

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 3H

40S ribosomal protein S6