HL_6IP8_118
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUAGGGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_118 not in the Motif Atlas
- Homologous match to HL_4V90_033
- Geometric discrepancy: 0.1494
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6IP8|1|zy|C|30
6IP8|1|zy|U|31
6IP8|1|zy|U|32
6IP8|1|zy|A|33
6IP8|1|zy|G|34
6IP8|1|zy|G|35
6IP8|1|zy|G|36
6IP8|1|zy|U|37
6IP8|1|zy|G|38
Current chains
- Chain zy
- P-site tRNA
Nearby chains
- Chain 2m
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2x
- 40S ribosomal protein S16
- Chain zv
- mRNA
- Chain zw
- Eukaryotic peptide chain release factor subunit 1
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