HL_6IP8_134
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6IP8_134 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.176
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6IP8|1|1B|A|32
6IP8|1|1B|U|33
6IP8|1|1B|C|34
6IP8|1|1B|U|35
6IP8|1|1B|C|36
6IP8|1|1B|G|37
6IP8|1|1B|U|38
6IP8|1|1B|C|39
6IP8|1|1B|U|40
6IP8|1|1B|G|41
6IP8|1|1B|A|42
6IP8|1|1B|U|43
6IP8|1|1B|C|44
6IP8|1|1B|U|45
Current chains
- Chain 1B
- 5S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2E
- 60S ribosomal protein L11
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