HL_6IP8_136

3D structure

PDB id

6IP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCAAGGA

Length

8 nucleotides

Bulged bases

6IP8|1|2m|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6IP8_136 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3371

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

6IP8|1|2m|U|461
6IP8|1|2m|C|462
6IP8|1|2m|C|463
6IP8|1|2m|A|464
6IP8|1|2m|A|465
6IP8|1|2m|G|466
6IP8|1|2m|G|467
6IP8|1|2m|A|468

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2P

60S ribosomal protein L23

Chain 3H

40S ribosomal protein S6