HL_6KE6_017

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

6KE6|1|SA|G|337

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6KE6_017 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.2389

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6KE6|1|SA|G|330
6KE6|1|SA|A|331
6KE6|1|SA|U|332
6KE6|1|SA|A|333
6KE6|1|SA|G|334
6KE6|1|SA|U|335
6KE6|1|SA|G|336
6KE6|1|SA|G|337
6KE6|1|SA|C|338

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RA

Ribosome biogenesis protein ENP2

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A