HL_6LKQ_004

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_004 not in the Motif Atlas

Homologous match to HL_5J7L_004

Geometric discrepancy: 0.2084

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6LKQ|1|s|C|186
6LKQ|1|s|G|187
6LKQ|1|s|C|188
6LKQ|1|s|A|189
6LKQ|1|s|A|190
6LKQ|1|s|G|191

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain S

30S ribosomal protein S20