HL_6LKQ_014

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_014 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.1521

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6LKQ|1|s|G|617
6LKQ|1|s|C|618
6LKQ|1|s|U|619
6LKQ|1|s|C|620
6LKQ|1|s|A|621
6LKQ|1|s|A|622
6LKQ|1|s|C|623

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S4

Chain O

30S ribosomal protein S16