HL_6LKQ_017
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6LKQ|1|s|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LKQ_017 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0902
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6LKQ|1|s|G|786
6LKQ|1|s|A|787
6LKQ|1|s|U|788
6LKQ|1|s|U|789
6LKQ|1|s|A|790
6LKQ|1|s|G|791
6LKQ|1|s|A|792
6LKQ|1|s|U|793
6LKQ|1|s|A|794
6LKQ|1|s|C|795
6LKQ|1|s|C|796
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Viomycin
- Chain J
- 30S ribosomal protein S11
- Chain T
- 30S ribosomal protein S21
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- messenger RNA
Coloring options: