HL_6LKQ_018

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

6LKQ|1|s|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_018 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.1696

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6LKQ|1|s|C|839
6LKQ|1|s|C|840
6LKQ|1|s|C|841
6LKQ|1|s|U|842
6LKQ|1|s|U|843
6LKQ|1|s|G|844
6LKQ|1|s|A|845
6LKQ|1|s|G|846
6LKQ|1|s|G|847

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S2

Chain Q

30S ribosomal protein S18