HL_6LKQ_042

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6LKQ|1|t|G|329, 6LKQ|1|t|A|330, 6LKQ|1|t|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_042 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1193

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6LKQ|1|t|G|327
6LKQ|1|t|U|328
6LKQ|1|t|G|329
6LKQ|1|t|A|330
6LKQ|1|t|C|331
6LKQ|1|t|A|332
6LKQ|1|t|G|333
6LKQ|1|t|C|334
6LKQ|1|t|C|335

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L4

Chain c

50S ribosomal protein L24