HL_6LKQ_057

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6LKQ|1|t|U|958, 6LKQ|1|t|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_057 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1228

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6LKQ|1|t|U|955
6LKQ|1|t|G|956
6LKQ|1|t|C|957
6LKQ|1|t|U|958
6LKQ|1|t|A|959
6LKQ|1|t|A|960
6LKQ|1|t|C|961
6LKQ|1|t|G|962

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L16

Chain u

5S ribosomal RNA; 5S rRNA