HL_6LKQ_058

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_058 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1679

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|G|978
6LKQ|1|t|A|979
6LKQ|1|t|A|980
6LKQ|1|t|A|981
6LKQ|1|t|C|982
6LKQ|1|t|A|983
6LKQ|1|t|A|984
6LKQ|1|t|C|985

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L20

Chain 9

50S ribosomal protein L21