HL_6LKQ_060

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6LKQ|1|t|U|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_060 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.5234

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6LKQ|1|t|C|1092
6LKQ|1|t|G|1093
6LKQ|1|t|U|1094
6LKQ|1|t|A|1095
6LKQ|1|t|A|1096
6LKQ|1|t|U|1097
6LKQ|1|t|A|1098
6LKQ|1|t|G|1099

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L6

Chain Z

50S ribosomal protein L11

Chain m

50S ribosomal protein L36