HL_6LKQ_076

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6LKQ|1|t|A|1780, 6LKQ|1|t|U|1781, 6LKQ|1|t|U|1782, 6LKQ|1|t|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_076 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0877

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6LKQ|1|t|U|1777
6LKQ|1|t|U|1778
6LKQ|1|t|U|1779
6LKQ|1|t|A|1780
6LKQ|1|t|U|1781
6LKQ|1|t|U|1782
6LKQ|1|t|A|1783
6LKQ|1|t|A|1784
6LKQ|1|t|A|1785
6LKQ|1|t|A|1786
6LKQ|1|t|A|1787

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2

Chain k

50S ribosomal protein L34