3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
6LKQ|1|t|A|1808
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6LKQ_077 not in the Motif Atlas
Homologous match to HL_5J7L_179
Geometric discrepancy: 0.1204
The information below is about HL_5J7L_179
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_04783.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
9

Unit IDs

6LKQ|1|t|C|1806
6LKQ|1|t|G|1807
6LKQ|1|t|A|1808
6LKQ|1|t|A|1809
6LKQ|1|t|A|1810
6LKQ|1|t|G|1811

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain U
50S ribosomal protein L2
Chain f
50S ribosomal protein L28

Coloring options:


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