HL_6LKQ_079
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 6LKQ|1|t|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LKQ_079 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1568
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6LKQ|1|t|G|1910
6LKQ|1|t|U|1911
6LKQ|1|t|A|1912
6LKQ|1|t|A|1913
6LKQ|1|t|C|1914
6LKQ|1|t|U|1915
6LKQ|1|t|A|1916
6LKQ|1|t|U|1917
6LKQ|1|t|A|1918
6LKQ|1|t|A|1919
6LKQ|1|t|C|1920
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Viomycin
- Chain AA
- Viomycin
- Chain BA
- Viomycin
- Chain s
- Small subunit ribosomal RNA; SSU rRNA
- Chain w
- messenger RNA
- Chain y
- Viomycin
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