HL_6LKQ_080

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6LKQ|1|t|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_080 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0945

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6LKQ|1|t|G|1949
6LKQ|1|t|G|1950
6LKQ|1|t|U|1951
6LKQ|1|t|A|1952
6LKQ|1|t|A|1953
6LKQ|1|t|G|1954
6LKQ|1|t|U|1955
6LKQ|1|t|U|1956
6LKQ|1|t|C|1957

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L14

Chain s

Small subunit ribosomal RNA; SSU rRNA