HL_6LKQ_085

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6LKQ|1|t|A|2268, 6LKQ|1|t|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_085 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0832

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6LKQ|1|t|C|2264
6LKQ|1|t|U|2265
6LKQ|1|t|A|2266
6LKQ|1|t|A|2267
6LKQ|1|t|A|2268
6LKQ|1|t|G|2269
6LKQ|1|t|A|2270
6LKQ|1|t|G|2271
6LKQ|1|t|U|2272
6LKQ|1|t|A|2273
6LKQ|1|t|A|2274
6LKQ|1|t|C|2275
6LKQ|1|t|G|2276

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L16

Chain e

50S ribosomal protein L27