HL_6LKQ_088

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_088 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0944

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6LKQ|1|t|U|2356
6LKQ|1|t|G|2357
6LKQ|1|t|A|2358
6LKQ|1|t|C|2359
6LKQ|1|t|G|2360
6LKQ|1|t|G|2361

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L15

Chain e

50S ribosomal protein L27

Chain l

50S ribosomal protein L35