HL_6LKQ_092

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6LKQ|1|t|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_092 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.126

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

6LKQ|1|t|U|2528
6LKQ|1|t|G|2529
6LKQ|1|t|A|2530
6LKQ|1|t|A|2531
6LKQ|1|t|G|2532
6LKQ|1|t|U|2533
6LKQ|1|t|A|2534
6LKQ|1|t|G|2535

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L6

Chain m

50S ribosomal protein L36