HL_6LKQ_097

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6LKQ|1|t|G|2751, 6LKQ|1|t|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_097 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0958

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|C|2745
6LKQ|1|t|U|2746
6LKQ|1|t|G|2747
6LKQ|1|t|A|2748
6LKQ|1|t|A|2749
6LKQ|1|t|A|2750
6LKQ|1|t|G|2751
6LKQ|1|t|C|2752
6LKQ|1|t|A|2753
6LKQ|1|t|U|2754
6LKQ|1|t|C|2755
6LKQ|1|t|U|2756
6LKQ|1|t|A|2757
6LKQ|1|t|A|2758
6LKQ|1|t|G|2759

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L13

Chain Y

50S ribosomal protein L6

Chain m

50S ribosomal protein L36