HL_6LKQ_107
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUUAGGC
- Length
- 8 nucleotides
- Bulged bases
- 6LKQ|1|t|U|546, 6LKQ|1|t|A|547, 6LKQ|1|t|G|548, 6LKQ|1|t|G|549
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LKQ_107 not in the Motif Atlas
- Homologous match to HL_5J7L_149
- Geometric discrepancy: 0.3206
- The information below is about HL_5J7L_149
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_09452.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6LKQ|1|t|G|543
6LKQ|1|t|C|544
6LKQ|1|t|U|545
6LKQ|1|t|U|546
6LKQ|1|t|A|547
6LKQ|1|t|G|548
6LKQ|1|t|G|549
6LKQ|1|t|C|550
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L13
- Chain 8
- 50S ribosomal protein L20
- Chain 9
- 50S ribosomal protein L21
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