HL_6LKQ_111

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_111 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2023

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6LKQ|1|t|G|2304
6LKQ|1|t|U|2305
6LKQ|1|t|C|2306
6LKQ|1|t|G|2307
6LKQ|1|t|G|2308
6LKQ|1|t|A|2309
6LKQ|1|t|C|2310
6LKQ|1|t|A|2311
6LKQ|1|t|U|2312

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L5