HL_6LQM_027

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

6LQM|1|2|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_027 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.3406

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6LQM|1|2|C|1816
6LQM|1|2|U|1817
6LQM|1|2|G|1818
6LQM|1|2|G|1819
6LQM|1|2|C|1820
6LQM|1|2|G|1821
6LQM|1|2|U|1822
6LQM|1|2|G|1823

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21

Chain r

60S ribosomal protein L5