HL_6LQM_052

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6LQM|1|2|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_052 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.085

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6LQM|1|2|U|3796
6LQM|1|2|C|3797
6LQM|1|2|U|3798
6LQM|1|2|A|3799
6LQM|1|2|A|3800
6LQM|1|2|U|3801
6LQM|1|2|U|3802
6LQM|1|2|A|3803
6LQM|1|2|G|3804

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain e

60S ribosomal protein L23