HL_6LQP_005

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQP_005 not in the Motif Atlas

Geometric match to HL_4QLM_001

Geometric discrepancy: 0.193

The information below is about HL_4QLM_001

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6LQP|1|5A|C|120
6LQP|1|5A|G|121
6LQP|1|5A|U|122
6LQP|1|5A|C|123
6LQP|1|5A|A|124
6LQP|1|5A|G|125

Current chains

Chain 5A

5' ETS

Nearby chains

Chain RO

Nucleolar complex protein 4