HL_6LQP_019

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6LQP|1|SA|A|400, 6LQP|1|SA|C|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQP_019 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.5589

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6LQP|1|SA|C|393
6LQP|1|SA|C|394
6LQP|1|SA|U|395
6LQP|1|SA|G|396
6LQP|1|SA|A|397
6LQP|1|SA|G|398
6LQP|1|SA|A|399
6LQP|1|SA|A|400
6LQP|1|SA|A|401
6LQP|1|SA|C|402
6LQP|1|SA|G|403
6LQP|1|SA|G|404

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RA

Ribosome biogenesis protein ENP2

Chain SH

40S ribosomal protein S6-A

Chain SJ

40S ribosomal protein S8-A