HL_6LQP_032
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQP_032 not in the Motif Atlas
- Homologous match to HL_4V88_218
- Geometric discrepancy: 0.2461
- The information below is about HL_4V88_218
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6LQP|1|SA|C|1501
6LQP|1|SA|G|1502
6LQP|1|SA|A|1503
6LQP|1|SA|G|1504
6LQP|1|SA|A|1505
6LQP|1|SA|G|1506
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5H
- Something about silencing protein 10
- Chain RI
- Ribosome biogenesis protein UTP30
- Chain RJ
- Ribosome biogenesis protein BMS1
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