HL_6LQQ_003

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQQ_003 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2581

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6LQQ|1|5A|C|4
6LQQ|1|5A|G|5
6LQQ|1|5A|A|6
6LQQ|1|5A|A|7
6LQQ|1|5A|A|8
6LQQ|1|5A|G|9

Current chains

Chain 5A

5' ETS

Nearby chains

Chain A8

U3 small nucleolar RNA-associated protein 8

Chain A9

U3 small nucleolar RNA-associated protein 9

Chain AG

NET1-associated nuclear protein 1