HL_6LQQ_011

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6LQQ|1|SA|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQQ_011 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.376

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQQ|1|SA|G|154
6LQQ|1|SA|U|155
6LQQ|1|SA|A|156
6LQQ|1|SA|A|157
6LQQ|1|SA|U|158
6LQQ|1|SA|U|159
6LQQ|1|SA|C|160

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RL

RNA cytidine acetyltransferase

Chain SH

40S ribosomal protein S6-A