HL_6LQQ_017
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6LQQ|1|SA|A|400, 6LQQ|1|SA|C|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQQ_017 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.5589
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6LQQ|1|SA|C|393
6LQQ|1|SA|C|394
6LQQ|1|SA|U|395
6LQQ|1|SA|G|396
6LQQ|1|SA|A|397
6LQQ|1|SA|G|398
6LQQ|1|SA|A|399
6LQQ|1|SA|A|400
6LQQ|1|SA|A|401
6LQQ|1|SA|C|402
6LQQ|1|SA|G|403
6LQQ|1|SA|G|404
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RA
- Ribosome biogenesis protein ENP2
- Chain SH
- 40S ribosomal protein S6-A
- Chain SJ
- 40S ribosomal protein S8-A
Coloring options: