HL_6LQQ_026
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UUUUUUAAUG
- Length
- 10 nucleotides
- Bulged bases
- 6LQQ|1|SA|U|1058, 6LQQ|1|SA|U|1059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQQ_026 not in the Motif Atlas
- Geometric match to HL_4YAZ_004
- Geometric discrepancy: 0.263
- The information below is about HL_4YAZ_004
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_48778.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 46
Unit IDs
6LQQ|1|SA|U|1055
6LQQ|1|SA|U|1056
6LQQ|1|SA|U|1057
6LQQ|1|SA|U|1058
6LQQ|1|SA|U|1059
6LQQ|1|SA|U|1060
6LQQ|1|SA|A|1061
6LQQ|1|SA|A|1062
6LQQ|1|SA|U|1063
6LQQ|1|SA|G|1064
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain RE
- U3 small nucleolar RNA-associated protein 22
- Chain RF
- Ribosomal RNA-processing protein 7
- Chain SC
- 40S ribosomal protein S1-A
- Chain Sc
- 40S ribosomal protein S27-A
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