HL_90436.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	1-3
1	HL_4WF9_037	4WF9	0.4590	1	Mini UNCG	X	LSU rRNA	C	1612	A	1614	G	1615	cWW
2	HL_4LFB_018	4LFB	0.2976	2	Mini UNCG	A	SSU rRNA	G	838	C	840	C	848	ncWW
3	HL_5U30_001	5U30	0.1551	1	Mini UNCG	B	sgRNA	U	4	G	6	A	7	cWW
4	HL_5SWD_005	5SWD	0.1578	3	Mini UNCG	B	Purine riboswitch	U	47	C	50	A	52	cWW
5	HL_7A0S_017	7A0S	0.1283	3	Mini UNCG with extended bulge	X	LSU rRNA	C	553	U	557	G	558	cWW
6	HL_7D3J_001	7D3J	0.0586	2		B	RNA (43-MER)	C	12	C	15	G	16	cWW
7	HL_8GLP_044	8GLP	0.0000	2		L5	LSU rRNA	C	2738	U	2741	G	2742	cWW
8	HL_9AXU_037	9AXU	0.0419	2		2	LSU rRNA	C	1833	U	1836	G	1837	cWW
9	HL_6LTU_001	6LTU	0.0594	2		B	RNA (56-mer)	U	12	C	15	A	16	cWW
10	HL_8OI5_036	8OI5	0.0732	2		1	LSU rRNA	C	1788	U	1791	G	1792	cWW
11	HL_9E6Q_039	9E6Q	0.0819	2	Mini UNCG (H)	1	LSU rRNA	C	1707	U	1710	G	1711	cWW
12	HL_4V9F_041	4V9F	0.0785	2	Mini UNCG	0	LSU rRNA	C	1651	U	1654	G	1655	cWW
13	HL_8KAL_002	8KAL	0.1366	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
14	HL_5F9R_002	5F9R	0.1381	1	Mini UNCG	A	tracrRNA	C	73	A	75	G	76	cWW
15	HL_7A0S_039	7A0S	0.1810	1	Mini UNCG	X	LSU rRNA	C	1581	A	1583	G	1584	cWW
16	HL_8B0X_067	8B0X	0.1757	1	Mini UNCG (H)	a	LSU rRNA	C	1567	G	1569	G	1570	cWW
17	HL_9DFE_037	9DFE	0.1526	1	Mini UNCG	1A	LSU rRNA	C	1565	A	1567	G	1568	cWW
18	HL_7QQP_002	7QQP	0.1133	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
19	HL_7QQX_002	7QQX	0.1168	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
20	HL_7QR0_002	7QR0	0.1201	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
21	HL_5B2T_002	5B2T	0.1136	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
22	HL_5FQ5_002	5FQ5	0.1366	1	Mini UNCG	A	tracrRNA	C	55	A	57	G	58	cWW
23	HL_5VW1_002	5VW1	0.1376	1	Mini UNCG	C	tracrRNA	C	55	A	57	G	58	cWW
24	HL_8P9A_151	8P9A	0.0980	2	Mini UNCG	AR	LSU rRNA	C	1792	U	1795	G	1796	cWW
25	HL_8B0X_098	8B0X	0.1645	2	Mini UNCG (H)	b	5S rRNA	G	86	C	88	C	90	cWW
26	HL_8P9A_182	8P9A	0.1851	1	Mini UNCG	AR	LSU rRNA	C	3350	U	3352	G	3353	cWW
27	HL_8KAJ_001	8KAJ	0.1840	1		I	tracrRNA	C	55	A	57	G	58	cWW
28	HL_8VMA_002	8VMA	0.1581	1	Mini UNCG	C	Enterovirus 5' cloverleaf cis-acting replication element	C	37	C	39	G	40	cWW
29	HL_8B0X_071	8B0X	0.2285	1		a	LSU rRNA	C	1730	C	1732	G	1733	cWW
30	HL_8B0X_094	8B0X	0.2462	1		a	LSU rRNA	C	2800	U	2802	G	2803	cWW
31	HL_4L8H_001	4L8H	0.1944	2	Mini UNCG	R	RNA operator hairpin	C	9	A	11	G	13	cWW
32	HL_8P9A_196	8P9A	0.2249	1	Mini UNCG	sR	SSU rRNA	C	276	U	278	G	279	cWW
33	HL_8OI5_067	8OI5	0.2720	1	Mini UNCG (H)	1	LSU rRNA	C	3315	U	3317	G	3318	cWW
34	HL_4V9F_021	4V9F	0.2676	2	Mini UNCG	0	LSU rRNA	C	712	U	714	G	716	cWW
35	HL_5AH5_007	5AH5	0.2978	2	Mini UNCG	D	tRNA	C	46\|\|\|A	C	46\|\|\|C	G	46\|\|\|E	cWW
36	HL_4YAZ_004	4YAZ	0.4042	2	Mini UNCG	R	Cyclic di-GMP-I riboswitch	C	56	C	58	G	60	cWW
37	HL_4LFB_005	4LFB	0.5185	2	Mini UNCG	A	SSU rRNA	C	201	U	203	G	216	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAG	9
CUUG	4
CCUUG	3
GUCUC	2
CCGUG	2
CAAG	2
CUUUG	2
CGAG	1
UAGA	1
UUUCUA	1
CUUAUG	1
CAUCG	1
UUUCA	1
CCAUG	1
CAGG	1
CACG	1
CUCG	1
CUAAG	1
CUCUG	1
CCCUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UA	9
UU	4
UCU	3
CUU	3
AG	2
CGU	2
AA	2
UUU	2
GA	1
UUCU	1
UUAU	1
AUC	1
UUC	1
CAU	1
AC	1
UC	1
UAA	1
CCU	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_90436.1 Version HL_90436.1 of this group appears in releases 4.0 to 4.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_90436.1 Version HL_90436.1 of this group appears in releases 4.0 to 4.0

Download

Csv

Json