HL_6LQQ_031

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6LQQ|1|SA|U|1595, 6LQQ|1|SA|C|1596, 6LQQ|1|SA|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQQ_031 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.3365

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

6LQQ|1|SA|G|1594
6LQQ|1|SA|U|1595
6LQQ|1|SA|C|1596
6LQQ|1|SA|A|1597
6LQQ|1|SA|U|1598
6LQQ|1|SA|C|1599
6LQQ|1|SA|A|1600
6LQQ|1|SA|G|1601
6LQQ|1|SA|C|1602

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RJ

Ribosome biogenesis protein BMS1

Chain RN

Nucleolar complex protein 14