HL_6LQR_014

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

6LQR|1|SA|A|400, 6LQR|1|SA|C|402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQR_014 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.5589

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6LQR|1|SA|C|393
6LQR|1|SA|C|394
6LQR|1|SA|U|395
6LQR|1|SA|G|396
6LQR|1|SA|A|397
6LQR|1|SA|G|398
6LQR|1|SA|A|399
6LQR|1|SA|A|400
6LQR|1|SA|A|401
6LQR|1|SA|C|402
6LQR|1|SA|G|403
6LQR|1|SA|G|404

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RA

Ribosome biogenesis protein ENP2

Chain SH

40S ribosomal protein S6-A

Chain SJ

40S ribosomal protein S8-A