HL_6LQR_021

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQR_021 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1515

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6LQR|1|SA|A|900
6LQR|1|SA|G|901
6LQR|1|SA|G|902
6LQR|1|SA|U|903
6LQR|1|SA|G|904
6LQR|1|SA|A|905
6LQR|1|SA|A|906
6LQR|1|SA|A|907
6LQR|1|SA|U|908
6LQR|1|SA|U|909

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13

Chain SP

40S ribosomal protein S14-A