HL_6LQR_032

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

GGGCAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQR_032 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.252

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6LQR|1|SA|G|1697
6LQR|1|SA|G|1698
6LQR|1|SA|G|1699
6LQR|1|SA|C|1700
6LQR|1|SA|A|1701
6LQR|1|SA|A|1702
6LQR|1|SA|C|1703
6LQR|1|SA|U|1704

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22