HL_6LQS_007

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6LQS|1|SA|U|74, 6LQS|1|SA|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_007 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2449

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6LQS|1|SA|C|70
6LQS|1|SA|A|71
6LQS|1|SA|A|72
6LQS|1|SA|U|73
6LQS|1|SA|U|74
6LQS|1|SA|U|75
6LQS|1|SA|A|76
6LQS|1|SA|U|77
6LQS|1|SA|A|78
6LQS|1|SA|C|79
6LQS|1|SA|A|80
6LQS|1|SA|G|81

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SH

40S ribosomal protein S6-A